3/24/2024 0 Comments Fiji is imagej![]() Start the plugin from Plugins > StarDist > StarDist 2D. Suitable test images can for instance be found at the Broad Bioimage Benchmark Collection: Note, that currently only 2D and 2D+time images are supported. Click on Apply changes to install the plugin.(If StarDist is missing, click Update URLs to refresh the list of update sites.) Scroll down the list and tick the checkboxes for update sites CSBDeep and StarDist, then click the Close button.Click on the button Manage update sites.Start Fiji (or download and install it from here first).If you have 3D data, please use our python library. The plugin currently only supports 2D image and time lapse data. Please only file an issue here for bug reports or if you have technical questions regarding the plugin. If you open a new topic, please provide a clear and concise description to understand and ideally reproduce the issue you’re having. If you can’t find what you’re looking for, please create a new topic at the forum (and use the tag stardist). If that doesn’t solve your issue, you can browse the existing stardist-tagged forum posts or search the image.sc forum. ![]() If you need any help, please first take a look at the StarDist documentation and frequently asked questions (FAQ). See the main repository for links to our publications and the full-featured Python package that can also be used to train new models. The plugin can be used to apply already trained models to new images. This is the ImageJ/Fiji plugin for StarDist, a cell/nuclei detection method for microscopy images with star-convex shape priors. If you’d like to help, check out the how to help guide! The content of this page has not been vetted since shifting away from MediaWiki. ![]()
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